IL_4V7E_232
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4V7E|1|Ad|C|1278
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_232 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.1487
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Ad|U|1276
4V7E|1|Ad|G|1277
4V7E|1|Ad|C|1278
4V7E|1|Ad|A|1279
4V7E|1|Ad|U|1280
*
4V7E|1|Ad|A|1442
4V7E|1|Ad|U|1443
4V7E|1|Ad|G|1444
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Af
- 5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'
- Chain BD
- 40S ribosomal protein S3
- Chain BK
- 40S ribosomal protein S10E
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