IL_4V7E_250

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_250 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.1915

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4V7E|1|Ad|C|1657
4V7E|1|Ad|U|1658
4V7E|1|Ad|A|1659
4V7E|1|Ad|C|1660
*
4V7E|1|Ad|G|1758
4V7E|1|Ad|A|1759
4V7E|1|Ad|A|1760
4V7E|1|Ad|G|1761

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BX

40S ribosomal protein S12

Chain Be

40S ribosomal protein S30E

Chain Cn

60S ribosomal protein L41E