IL_4V7E_258

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

4V7E|1|Ad|A|1698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_258 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.3224

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V7E|1|Ad|G|1697
4V7E|1|Ad|A|1698
4V7E|1|Ad|C|1699
*
4V7E|1|Ad|G|1720
4V7E|1|Ad|A|1721
4V7E|1|Ad|C|1722

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6