IL_4V7E_269

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

4V7E|1|Aa|G|2334

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_269 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0908

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|G|1894
4V7E|1|Aa|G|1895
4V7E|1|Aa|A|1896
4V7E|1|Aa|A|1897
4V7E|1|Aa|G|1898
4V7E|1|Aa|U|1899
4V7E|1|Aa|C|1900
4V7E|1|Aa|G|1901
4V7E|1|Aa|G|1902
*
4V7E|1|Aa|C|2332
4V7E|1|Aa|U|2333
4V7E|1|Aa|G|2334
4V7E|1|Aa|U|2335
4V7E|1|Aa|C|2336

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L14