IL_4V7E_277

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGAC*GCU

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|A|2774

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_277 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.342

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V7E|1|Aa|A|2772
4V7E|1|Aa|G|2773
4V7E|1|Aa|A|2774
4V7E|1|Aa|C|2775
*
4V7E|1|Aa|G|2789
4V7E|1|Aa|C|2790
4V7E|1|Aa|U|2791

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13E

Chain Ca

60S ribosomal protein L15

Chain Co

60S ribosomal protein L44E