IL_4V7E_283

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UAUCAACU*GGUGGUGACG

Length

18 nucleotides

Bulged bases

4V7E|1|Ad|U|317, 4V7E|1|Ad|U|355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|U|315
4V7E|1|Ad|A|316
4V7E|1|Ad|U|317
4V7E|1|Ad|C|318
4V7E|1|Ad|A|319
4V7E|1|Ad|A|320
4V7E|1|Ad|C|321
4V7E|1|Ad|U|322
*
4V7E|1|Ad|G|350
4V7E|1|Ad|G|351
4V7E|1|Ad|U|352
4V7E|1|Ad|G|353
4V7E|1|Ad|G|354
4V7E|1|Ad|U|355
4V7E|1|Ad|G|356
4V7E|1|Ad|A|357
4V7E|1|Ad|C|358
4V7E|1|Ad|G|359

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BL

40S ribosomal protein S17

Chain BX

40S ribosomal protein S12