IL_4V7E_285
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAAGAAAUU*ACAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|800
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_285 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.4526
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Ad|G|757
4V7E|1|Ad|A|758
4V7E|1|Ad|A|759
4V7E|1|Ad|G|760
4V7E|1|Ad|A|761
4V7E|1|Ad|A|762
4V7E|1|Ad|A|763
4V7E|1|Ad|U|764
4V7E|1|Ad|U|765
*
4V7E|1|Ad|A|797
4V7E|1|Ad|C|798
4V7E|1|Ad|A|799
4V7E|1|Ad|U|800
4V7E|1|Ad|U|801
4V7E|1|Ad|A|802
4V7E|1|Ad|G|803
4V7E|1|Ad|C|804
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4E
- Chain BJ
- 40S ribosomal protein S4
- Chain BL
- 40S ribosomal protein S17
- Chain BW
- 40S ribosomal protein S8
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