IL_4V7E_287

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGGCUC*GUCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|G|989
4V7E|1|Ad|G|990
4V7E|1|Ad|G|991
4V7E|1|Ad|G|992
4V7E|1|Ad|C|993
4V7E|1|Ad|U|994
4V7E|1|Ad|C|995
*
4V7E|1|Ad|G|1019
4V7E|1|Ad|U|1020
4V7E|1|Ad|C|1021
4V7E|1|Ad|U|1022

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BN

40S ribosomal protein S15

Chain BO

40S ribosomal protein S11

Chain Ba

40S ribosomal protein S26E

Chain CA

60S ribosomal protein L2

Chain Cp

60S ribosomal protein L43E