IL_4V7I_006
3D structure
- PDB id
- 4V7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome-SecY complex.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.6 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7I_006 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.2154
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V7I|1|A8|G|24
4V7I|1|A8|U|25
4V7I|1|A8|G|26
4V7I|1|A8|G|27
4V7I|1|A8|A|28
4V7I|1|A8|U|29
4V7I|1|A8|G|30
*
4V7I|1|A8|C|510
4V7I|1|A8|U|511
4V7I|1|A8|G|512
4V7I|1|A8|A|513
4V7I|1|A8|A|514
4V7I|1|A8|A|515
4V7I|1|A8|C|516
Current chains
- Chain A8
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L32
- Chain AQ
- 50S ribosomal protein L20
- Chain AS
- 50S ribosomal protein L22
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