IL_4V7I_009

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_009 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.4401

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V7I|1|A8|G|81
4V7I|1|A8|U|82
4V7I|1|A8|A|83
4V7I|1|A8|A|84
4V7I|1|A8|G|85
*
4V7I|1|A8|C|97
4V7I|1|A8|G|98
4V7I|1|A8|U|99
4V7I|1|A8|U|100
4V7I|1|A8|A|101
4V7I|1|A8|U|102
4V7I|1|A8|A|103
4V7I|1|A8|A|104
4V7I|1|A8|C|105

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24

Chain AY

50S ribosomal protein L29