IL_4V7I_011

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_011 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.2069

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7I|1|A8|G|188
4V7I|1|A8|G|189
4V7I|1|A8|A|190
4V7I|1|A8|A|191
4V7I|1|A8|C|192
4V7I|1|A8|U|193
4V7I|1|A8|G|194
*
4V7I|1|A8|C|201
4V7I|1|A8|U|202
4V7I|1|A8|A|203
4V7I|1|A8|A|204
4V7I|1|A8|G|205
4V7I|1|A8|U|206
4V7I|1|A8|A|207
4V7I|1|A8|C|208

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15

Chain AX

50S ribosomal protein L28