IL_4V7I_014

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4072

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7I|1|A8|C|274
4V7I|1|A8|C|275
4V7I|1|A8|U|276
4V7I|1|A8|G|277
4V7I|1|A8|A|278
4V7I|1|A8|A|279
4V7I|1|A8|U|280
4V7I|1|A8|C|281
*
4V7I|1|A8|G|359
4V7I|1|A8|U|360
4V7I|1|A8|G|361
4V7I|1|A8|A|362
4V7I|1|A8|G|363

Current chains

Chain A8

23S ribosomal RNA

Nearby chains