IL_4V7I_016

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V7I|1|A8|A|504, 4V7I|1|A8|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_016 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.2073

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V7I|1|A8|G|481
4V7I|1|A8|A|482
4V7I|1|A8|A|483
4V7I|1|A8|C|484
*
4V7I|1|A8|G|496
4V7I|1|A8|A|497
4V7I|1|A8|G|498
4V7I|1|A8|U|499
4V7I|1|A8|G|500
4V7I|1|A8|A|501
4V7I|1|A8|A|502
4V7I|1|A8|A|503
4V7I|1|A8|A|504
4V7I|1|A8|A|505
4V7I|1|A8|G|506
4V7I|1|A8|A|507
4V7I|1|A8|A|508
4V7I|1|A8|C|509

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AA

PREPROTEIN TRANSLOCASE SECY SUBUNIT

Chain AS

50S ribosomal protein L22

Chain AU

50S ribosomal protein L24