IL_4V7I_024

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_024 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.2672

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V7I|1|A8|U|703
4V7I|1|A8|G|704
4V7I|1|A8|A|705
4V7I|1|A8|A|706
4V7I|1|A8|G|707
*
4V7I|1|A8|U|724
4V7I|1|A8|G|725
4V7I|1|A8|G|726
4V7I|1|A8|A|727
4V7I|1|A8|G|728

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L2