3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_027 not in the Motif Atlas
Homologous match to IL_4WF9_028
Geometric discrepancy: 0.2225
The information below is about IL_4WF9_028
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

4V7I|1|A8|C|837
4V7I|1|A8|C|838
*
4V7I|1|A8|G|940
4V7I|1|A8|A|941
4V7I|1|A8|G|942

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AL
50S ribosomal protein L15

Coloring options:


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