3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
4V7I|1|A8|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_045 not in the Motif Atlas
Homologous match to IL_7RQB_042
Geometric discrepancy: 0.2828
The information below is about IL_7RQB_042
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.4
Basepair signature
cWW-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

4V7I|1|A8|C|1043
4V7I|1|A8|C|1044
4V7I|1|A8|C|1045
4V7I|1|A8|A|1046
4V7I|1|A8|G|1047
4V7I|1|A8|A|1048
4V7I|1|A8|C|1049
4V7I|1|A8|A|1050
4V7I|1|A8|G|1051
*
4V7I|1|A8|U|1108
4V7I|1|A8|C|1109
4V7I|1|A8|G|1110
4V7I|1|A8|A|1111
4V7I|1|A8|G|1112

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AG
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3776 s