IL_4V7I_045
3D structure
- PDB id
- 4V7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome-SecY complex.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.6 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V7I|1|A8|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7I_045 not in the Motif Atlas
- Homologous match to IL_7RQB_042
- Geometric discrepancy: 0.2828
- The information below is about IL_7RQB_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V7I|1|A8|C|1043
4V7I|1|A8|C|1044
4V7I|1|A8|C|1045
4V7I|1|A8|A|1046
4V7I|1|A8|G|1047
4V7I|1|A8|A|1048
4V7I|1|A8|C|1049
4V7I|1|A8|A|1050
4V7I|1|A8|G|1051
*
4V7I|1|A8|U|1108
4V7I|1|A8|C|1109
4V7I|1|A8|G|1110
4V7I|1|A8|A|1111
4V7I|1|A8|G|1112
Current chains
- Chain A8
- 23S ribosomal RNA
Nearby chains
- Chain AG
- 50S ribosomal protein L6
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