IL_4V7I_064

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_064 not in the Motif Atlas

Geometric match to IL_5J7L_064

Geometric discrepancy: 0.34

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V7I|1|A8|C|1489
4V7I|1|A8|A|1490
4V7I|1|A8|G|1491
*
4V7I|1|A8|C|1499
4V7I|1|A8|G|1500

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L2