IL_4V7I_069

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4V7I|1|A8|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_069 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.3184

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|A|1669
4V7I|1|A8|C|1670
4V7I|1|A8|U|1671
4V7I|1|A8|A|1672
4V7I|1|A8|G|1673
4V7I|1|A8|G|1674
*
4V7I|1|A8|C|1990
4V7I|1|A8|U|1991
4V7I|1|A8|G|1992
4V7I|1|A8|U|1993

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AK

50S ribosomal protein L14