IL_4V7I_077

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V7I|1|A8|A|1899, 4V7I|1|A8|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_077 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.3071

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7I|1|A8|U|1841
4V7I|1|A8|G|1842
*
4V7I|1|A8|U|1898
4V7I|1|A8|A|1899
4V7I|1|A8|A|1900
4V7I|1|A8|A|1901

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L2