IL_4V7I_089

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_089 not in the Motif Atlas

Geometric match to IL_7L0Z_001

Geometric discrepancy: 0.3856

The information below is about IL_7L0Z_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V7I|1|A8|C|2103
4V7I|1|A8|C|2104
4V7I|1|A8|U|2105
*
4V7I|1|A8|A|2184
4V7I|1|A8|U|2185
4V7I|1|A8|G|2186

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L1