IL_4V7I_114

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_114 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.3024

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V7I|1|A8|C|2806
4V7I|1|A8|U|2807
4V7I|1|A8|G|2808
4V7I|1|A8|A|2809
4V7I|1|A8|A|2810
4V7I|1|A8|G|2811
*
4V7I|1|A8|C|2889
4V7I|1|A8|G|2890
4V7I|1|A8|U|2891
4V7I|1|A8|G|2892

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AD

50S ribosomal protein L3