3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
UGA*UA
Length
5 nucleotides
Bulged bases
4V7I|1|BA|G|31
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_118 not in the Motif Atlas
Homologous match to IL_4LFB_001
Geometric discrepancy: 0.1807
The information below is about IL_4LFB_001
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

4V7I|1|BA|U|30
4V7I|1|BA|G|31
4V7I|1|BA|A|32
*
4V7I|1|BA|U|552
4V7I|1|BA|A|553

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BL
30S ribosomal protein S12

Coloring options:


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