IL_4V7I_144

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V7I|1|BA|A|532, 4V7I|1|BA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_144 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.4085

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V7I|1|BA|G|515
4V7I|1|BA|U|516
4V7I|1|BA|G|517
4V7I|1|BA|C|518
4V7I|1|BA|C|519
4V7I|1|BA|A|520
4V7I|1|BA|G|521
*
4V7I|1|BA|C|528
4V7I|1|BA|G|529
4V7I|1|BA|G|530
4V7I|1|BA|U|531
4V7I|1|BA|A|532
4V7I|1|BA|A|533
4V7I|1|BA|U|534
4V7I|1|BA|A|535
4V7I|1|BA|C|536

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12