3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7I_177 not in the Motif Atlas
Geometric match to IL_4V88_462
Geometric discrepancy: 0.2242
The information below is about IL_4V88_462
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4V7I|1|BA|C|1303
4V7I|1|BA|G|1304
4V7I|1|BA|G|1305
4V7I|1|BA|A|1306
4V7I|1|BA|U|1307
4V7I|1|BA|U|1308
*
4V7I|1|BA|A|1329
4V7I|1|BA|U|1330
4V7I|1|BA|G|1331
4V7I|1|BA|A|1332
4V7I|1|BA|A|1333
4V7I|1|BA|G|1334

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BG
30S ribosomal protein S7
Chain BM
30S ribosomal protein S13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1766 s