IL_4V7I_182

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7I_182 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.2317

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7I|1|BA|C|1412
4V7I|1|BA|A|1413
4V7I|1|BA|U|1414
*
4V7I|1|BA|G|1486
4V7I|1|BA|G|1487
4V7I|1|BA|G|1488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A8

Large subunit ribosomal RNA; LSU rRNA