IL_4V7I_193

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

4V7I|1|A8|C|2129, 4V7I|1|A8|U|2130, 4V7I|1|A8|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7I|1|A8|G|2124
4V7I|1|A8|G|2125
4V7I|1|A8|A|2126
4V7I|1|A8|G|2127
4V7I|1|A8|G|2128
4V7I|1|A8|C|2129
4V7I|1|A8|U|2130
4V7I|1|A8|U|2131
4V7I|1|A8|U|2132
4V7I|1|A8|G|2133
4V7I|1|A8|A|2134
4V7I|1|A8|A|2135
4V7I|1|A8|G|2136
*
4V7I|1|A8|U|2155
4V7I|1|A8|G|2156
4V7I|1|A8|G|2157
4V7I|1|A8|A|2158
4V7I|1|A8|G|2159
4V7I|1|A8|C|2160
4V7I|1|A8|C|2161
4V7I|1|A8|G|2162
4V7I|1|A8|A|2163
4V7I|1|A8|C|2164
4V7I|1|A8|C|2165
4V7I|1|A8|U|2166
4V7I|1|A8|U|2167
4V7I|1|A8|G|2168
4V7I|1|A8|A|2169
4V7I|1|A8|A|2170
4V7I|1|A8|A|2171
4V7I|1|A8|U|2172
4V7I|1|A8|A|2173
4V7I|1|A8|C|2174

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L1