IL_4V7J_002

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V7J|1|AA|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_002 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.0772

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V7J|1|AA|G|36
4V7J|1|AA|C|37
*
4V7J|1|AA|G|442
4V7J|1|AA|A|443
4V7J|1|AA|C|444

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AU

50S ribosomal protein L20