IL_4V7J_029

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_029 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1155

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V7J|1|AA|G|862
4V7J|1|AA|A|863
*
4V7J|1|AA|U|913
4V7J|1|AA|C|914
4V7J|1|AA|C|915

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25