IL_4V7J_034

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_034 not in the Motif Atlas

Geometric match to IL_3CZW_001

Geometric discrepancy: 0.1685

The information below is about IL_3CZW_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V7J|1|AA|G|881
4V7J|1|AA|G|882
4V7J|1|AA|G|883
*
4V7J|1|AA|C|893
4V7J|1|AA|C|894
4V7J|1|AA|U|895

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AZ

50S ribosomal protein L25