3D structure

PDB id
4V7J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CG*CACG
Length
6 nucleotides
Bulged bases
4V7J|1|AA|A|2572, 4V7J|1|AA|C|2573
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7J_100 not in the Motif Atlas
Homologous match to IL_5J7L_341
Geometric discrepancy: 0.0811
The information below is about IL_5J7L_341
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

4V7J|1|AA|C|2512
4V7J|1|AA|G|2513
*
4V7J|1|AA|C|2571
4V7J|1|AA|A|2572
4V7J|1|AA|C|2573
4V7J|1|AA|G|2574

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain AE
50S ribosomal protein L3

Coloring options:


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