IL_4V7J_109

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V7J|1|AA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_109 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0576

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V7J|1|AA|G|2737
4V7J|1|AA|A|2738
4V7J|1|AA|U|2739
4V7J|1|AA|A|2740
4V7J|1|AA|A|2741
4V7J|1|AA|C|2742
*
4V7J|1|AA|G|2762
4V7J|1|AA|G|2763
4V7J|1|AA|A|2764
4V7J|1|AA|A|2765
4V7J|1|AA|G|2766
4V7J|1|AA|C|2767

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AN

50S ribosomal protein L13