IL_4V7J_111

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_111 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.0745

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V7J|1|AA|G|2843
4V7J|1|AA|G|2844
4V7J|1|AA|G|2845
4V7J|1|AA|G|2846
*
4V7J|1|AA|C|2870
4V7J|1|AA|C|2871
4V7J|1|AA|G|2872
4V7J|1|AA|A|2873
4V7J|1|AA|C|2874

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19