IL_4V7J_134

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4V7J|1|Aa|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_134 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.2188

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V7J|1|Aa|U|367
4V7J|1|Aa|U|368
4V7J|1|Aa|C|369
*
4V7J|1|Aa|G|392
4V7J|1|Aa|A|393

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain BI

50S ribosomal protein L9