IL_4V7J_140
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_140 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1025
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
4V7J|1|Aa|C|504
4V7J|1|Aa|G|505
4V7J|1|Aa|G|506
4V7J|1|Aa|C|507
4V7J|1|Aa|C|508
4V7J|1|Aa|A|509
4V7J|1|Aa|A|510
4V7J|1|Aa|C|511
*
4V7J|1|Aa|G|540
4V7J|1|Aa|G|541
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain Ad
- 30S ribosomal protein S4
- Chain Ae
- 30S ribosomal protein S5
- Chain Al
- 30S ribosomal protein S12
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