IL_4V7J_163
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4V7J|1|Aa|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_163 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1419
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7J|1|Aa|U|1052
4V7J|1|Aa|G|1053
4V7J|1|Aa|C|1054
4V7J|1|Aa|A|1055
4V7J|1|Aa|U|1056
*
4V7J|1|Aa|A|1204
4V7J|1|Aa|U|1205
4V7J|1|Aa|G|1206
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain Ac
- 30S ribosomal protein S3
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
- Chain Ax
- RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')
- Chain Ay
- Toxin relE
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