IL_4V7J_221

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V7J|1|BA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_221 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.0942

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V7J|1|BA|G|1011
4V7J|1|BA|U|1012
4V7J|1|BA|C|1013
*
4V7J|1|BA|G|1149
4V7J|1|BA|C|1150

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20