IL_4V7J_335

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_335 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V7J|1|Ba|C|779
4V7J|1|Ba|A|780
4V7J|1|Ba|A|781
4V7J|1|Ba|A|782
4V7J|1|Ba|C|783
*
4V7J|1|Ba|G|799
4V7J|1|Ba|G|800
4V7J|1|Ba|U|801
4V7J|1|Ba|A|802
4V7J|1|Ba|G|803

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain Bk

30S ribosomal protein S11