IL_4V7J_340

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_340 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2469

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V7J|1|Ba|G|941
4V7J|1|Ba|G|942
4V7J|1|Ba|U|943
*
4V7J|1|Ba|A|1340
4V7J|1|Ba|U|1341
4V7J|1|Ba|C|1342

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bg

30S ribosomal protein S7

Chain Bi

30S ribosomal protein S9

Chain Bv

Transfer RNA; tRNA

Chain Bw

Transfer RNA; tRNA