IL_4V7J_387

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_387 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.1568

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7J|1|Ba|G|450
4V7J|1|Ba|A|451
4V7J|1|Ba|A|452
4V7J|1|Ba|A|453
4V7J|1|Ba|C|454
4V7J|1|Ba|C|455
4V7J|1|Ba|C|456
*
4V7J|1|Ba|G|475
4V7J|1|Ba|G|476
4V7J|1|Ba|A|477
4V7J|1|Ba|C|479
4V7J|1|Ba|U|480
4V7J|1|Ba|G|481
4V7J|1|Ba|A|482
4V7J|1|Ba|C|483

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16