IL_4V7K_016
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7K_016 not in the Motif Atlas
- Geometric match to IL_4WF9_017
- Geometric discrepancy: 0.0814
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V7K|1|AA|C|564
4V7K|1|AA|C|565
4V7K|1|AA|U|566
*
4V7K|1|AA|A|575
4V7K|1|AA|U|576
4V7K|1|AA|G|577
Current chains
- Chain AA
- RNA (2848-MER)
Nearby chains
- Chain A5
- 50S ribosomal protein L32
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AP
- 50S ribosomal protein L15
- Chain AU
- 50S ribosomal protein L20
- Chain AV
- 50S ribosomal protein L21
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