3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_016 not in the Motif Atlas
Geometric match to IL_4WF9_017
Geometric discrepancy: 0.0814
The information below is about IL_4WF9_017
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V7K|1|AA|C|564
4V7K|1|AA|C|565
4V7K|1|AA|U|566
*
4V7K|1|AA|A|575
4V7K|1|AA|U|576
4V7K|1|AA|G|577

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain A5
50S ribosomal protein L32
Chain AE
50S ribosomal protein L3
Chain AF
50S ribosomal protein L4
Chain AP
50S ribosomal protein L15
Chain AU
50S ribosomal protein L20
Chain AV
50S ribosomal protein L21

Coloring options:


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