IL_4V7K_022

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_022 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0649

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V7K|1|AA|U|703
4V7K|1|AA|G|704
4V7K|1|AA|A|705
4V7K|1|AA|A|706
4V7K|1|AA|G|707
*
4V7K|1|AA|U|724
4V7K|1|AA|G|725
4V7K|1|AA|G|726
4V7K|1|AA|A|727
4V7K|1|AA|G|728

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AD

50S ribosomal protein L2