3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAG*CGGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_086 not in the Motif Atlas
Geometric match to IL_7RQB_088
Geometric discrepancy: 0.2611
The information below is about IL_7RQB_088
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_38958.7
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V7K|1|AA|C|2297
4V7K|1|AA|A|2298
4V7K|1|AA|G|2299
*
4V7K|1|AA|C|2317
4V7K|1|AA|G|2318
4V7K|1|AA|G|2319
4V7K|1|AA|A|2320
4V7K|1|AA|G|2321

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain A0
50S ribosomal protein L27
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AG
50S ribosomal protein L5
Chain AS
50S ribosomal protein L18

Coloring options:


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