IL_4V7K_163

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_163 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.2318

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7K|1|Aa|C|1114
4V7K|1|Aa|C|1115
4V7K|1|Aa|C|1116
*
4V7K|1|Aa|G|1184
4V7K|1|Aa|G|1185
4V7K|1|Aa|G|1186

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ac

30S ribosomal protein S3

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z