IL_4V7K_181

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_181 not in the Motif Atlas

Geometric match to IL_4KYY_003

Geometric discrepancy: 0.2901

The information below is about IL_4KYY_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V7K|1|Aw|G|49
4V7K|1|Aw|U|50
4V7K|1|Aw|C|51
*
4V7K|1|Aw|G|63
4V7K|1|Aw|G|64
4V7K|1|Aw|C|65

Current chains

Chain Aw

RNA (77-MER)

Nearby chains

Chain AC

50S ribosomal protein L1