IL_4V7K_194

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

4V7K|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_194 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.1359

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7K|1|BA|C|288
4V7K|1|BA|A|289
4V7K|1|BA|G|290
*
4V7K|1|BA|U|350
4V7K|1|BA|G|351
4V7K|1|BA|G|352
4V7K|1|BA|G|353

Current chains

Chain BA

RNA (2848-MER)

Nearby chains