IL_4V7K_267

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_267 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.2051

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V7K|1|BA|C|2140
4V7K|1|BA|G|2141
4V7K|1|BA|C|2142
*
4V7K|1|BA|G|2149
4V7K|1|BA|U|2150
4V7K|1|BA|G|2151

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BC

50S ribosomal protein L1

Chain Bk

30S ribosomal protein S11