IL_4V7K_289

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

4V7K|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_289 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.0835

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V7K|1|BA|G|2838
4V7K|1|BA|G|2839
*
4V7K|1|BA|U|2878
4V7K|1|BA|C|2879
4V7K|1|BA|C|2880

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19