IL_4V7K_291

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_291 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.2471

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7K|1|BA|U|2847
4V7K|1|BA|G|2848
4V7K|1|BA|U|2849
4V7K|1|BA|A|2850
4V7K|1|BA|A|2851
4V7K|1|BA|G|2852
*
4V7K|1|BA|U|2865
4V7K|1|BA|U|2866
4V7K|1|BA|G|2867
4V7K|1|BA|A|2868
4V7K|1|BA|G|2869

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19