3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CCUAAG*UAG
Length
9 nucleotides
Bulged bases
4V7K|1|Ba|C|48, 4V7K|1|Ba|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_302 not in the Motif Atlas
Homologous match to IL_4LFB_003
Geometric discrepancy: 0.1129
The information below is about IL_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14177.2
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

4V7K|1|Ba|C|47
4V7K|1|Ba|C|48
4V7K|1|Ba|U|49
4V7K|1|Ba|A|50
4V7K|1|Ba|A|51
4V7K|1|Ba|G|52
*
4V7K|1|Ba|U|359
4V7K|1|Ba|A|360
4V7K|1|Ba|G|361

Current chains

Chain Ba
RNA (1504-MER)

Nearby chains

Chain Bl
30S ribosomal protein S12

Coloring options:


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