IL_4V7K_306

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V7K|1|Ba|G|129|||A, 4V7K|1|Ba|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_306 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.088

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V7K|1|Ba|U|129
4V7K|1|Ba|G|129|||A
4V7K|1|Ba|A|130
4V7K|1|Ba|C|131
*
4V7K|1|Ba|G|231
4V7K|1|Ba|G|232

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17

Chain Bt

30S ribosomal protein S20